Cluster: HRGMv2_3870_CGC31
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3870
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3870_13 | HRGMv2_3870_13_63 | 74442 | 75719 | + | PL42 |
| CAZyme | HRGMv2_3870_13 | HRGMv2_3870_13_64 | 75735 | 78044 | + | GH105 | GH154 |
| CAZyme | HRGMv2_3870_13 | HRGMv2_3870_13_65 | 78202 | 79212 | + | GH43_17 |
| CAZyme | HRGMv2_3870_13 | HRGMv2_3870_13_66 | 79231 | 80379 | + | GH43_24 |
| TF | HRGMv2_3870_13 | HRGMv2_3870_13_67 | 80463 | 84494 | - | HTH_AraC |
| TC | HRGMv2_3870_13 | HRGMv2_3870_13_68 | 84858 | 88115 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3870_13 | HRGMv2_3870_13_69 | 88128 | 90146 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_3870_13 | HRGMv2_3870_13_70 | 90557 | 91567 | - | Semialdhyde_dh | Semialdhyde_dhC |
| TC | HRGMv2_3870_13 | HRGMv2_3870_13_71 | 91756 | 93900 | + | 2.A.37.2.5 |
| pfam | HRGMv2_3870_13 | HRGMv2_3870_13_72 | 93915 | 94622 | + | ThiF |
| TC | HRGMv2_3870_13 | HRGMv2_3870_13_73 | 94627 | 95289 | + | 3.A.1.125.1 |
Gene ID: HRGMv2_3870_13_63
Type: CAZyme
Location: 74442 - 75719 (+)
Type: CAZyme
Location: 74442 - 75719 (+)
Gene ID: HRGMv2_3870_13_64
Type: CAZyme
Location: 75735 - 78044 (+)
Type: CAZyme
Location: 75735 - 78044 (+)
Gene ID: HRGMv2_3870_13_65
Type: CAZyme
Location: 78202 - 79212 (+)
Type: CAZyme
Location: 78202 - 79212 (+)
Gene ID: HRGMv2_3870_13_66
Type: CAZyme
Location: 79231 - 80379 (+)
Type: CAZyme
Location: 79231 - 80379 (+)
Gene ID: HRGMv2_3870_13_67
Type: TF
Location: 80463 - 84494 (-)
Type: TF
Location: 80463 - 84494 (-)
Gene ID: HRGMv2_3870_13_68
Type: TC
Location: 84858 - 88115 (+)
Type: TC
Location: 84858 - 88115 (+)
Gene ID: HRGMv2_3870_13_69
Type: pfam
Location: 88128 - 90146 (+)
Type: pfam
Location: 88128 - 90146 (+)
Gene ID: HRGMv2_3870_13_70
Type: pfam
Location: 90557 - 91567 (-)
Type: pfam
Location: 90557 - 91567 (-)
Gene ID: HRGMv2_3870_13_71
Type: TC
Location: 91756 - 93900 (+)
Type: TC
Location: 91756 - 93900 (+)
Gene ID: HRGMv2_3870_13_72
Type: pfam
Location: 93915 - 94622 (+)
Type: pfam
Location: 93915 - 94622 (+)
Gene ID: HRGMv2_3870_13_73
Type: TC
Location: 94627 - 95289 (+)
Type: TC
Location: 94627 - 95289 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.