Cluster: HRGMv2_3870_CGC10
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3870
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3870_3 | HRGMv2_3870_3_70 | 81453 | 83498 | + | 3.A.16.1.1 |
| pfam | HRGMv2_3870_3 | HRGMv2_3870_3_71 | 83531 | 84373 | + | CTP_transf_1 |
| CAZyme | HRGMv2_3870_3 | HRGMv2_3870_3_72 | 84409 | 85560 | - | GT19 |
| pfam | HRGMv2_3870_3 | HRGMv2_3870_3_73 | 85557 | 86330 | - | SurE |
| TC | HRGMv2_3870_3 | HRGMv2_3870_3_74 | 86543 | 87310 | + | 8.A.3.2.3 |
| pfam | HRGMv2_3870_3 | HRGMv2_3870_3_75 | 87317 | 88213 | + | ParBc | HTH_ParB | ParB_dimer |
| pfam | HRGMv2_3870_3 | HRGMv2_3870_3_76 | 88228 | 89016 | + | DUF5683 |
| CAZyme | HRGMv2_3870_3 | HRGMv2_3870_3_77 | 89020 | 90285 | + | GH23 |
Gene ID: HRGMv2_3870_3_70
Type: TC
Location: 81453 - 83498 (+)
Type: TC
Location: 81453 - 83498 (+)
Gene ID: HRGMv2_3870_3_71
Type: pfam
Location: 83531 - 84373 (+)
Type: pfam
Location: 83531 - 84373 (+)
Gene ID: HRGMv2_3870_3_72
Type: CAZyme
Location: 84409 - 85560 (-)
Type: CAZyme
Location: 84409 - 85560 (-)
Gene ID: HRGMv2_3870_3_73
Type: pfam
Location: 85557 - 86330 (-)
Type: pfam
Location: 85557 - 86330 (-)
Gene ID: HRGMv2_3870_3_74
Type: TC
Location: 86543 - 87310 (+)
Type: TC
Location: 86543 - 87310 (+)
Gene ID: HRGMv2_3870_3_75
Type: pfam
Location: 87317 - 88213 (+)
Type: pfam
Location: 87317 - 88213 (+)
Gene ID: HRGMv2_3870_3_76
Type: pfam
Location: 88228 - 89016 (+)
Type: pfam
Location: 88228 - 89016 (+)
Gene ID: HRGMv2_3870_3_77
Type: CAZyme
Location: 89020 - 90285 (+)
Type: CAZyme
Location: 89020 - 90285 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.