Cluster: HRGMv2_3870_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3870
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3870_1 | HRGMv2_3870_1_17 | 27144 | 30353 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3870_1 | HRGMv2_3870_1_18 | 30375 | 32363 | + | SusD_RagB | SusD-like_3 |
| sulfatase | HRGMv2_3870_1 | HRGMv2_3870_1_19 | 32445 | 33902 | + | S1_27 |
| CAZyme | HRGMv2_3870_1 | HRGMv2_3870_1_20 | 33899 | 35308 | + | GH29 |
Gene ID: HRGMv2_3870_1_17
Type: TC
Location: 27144 - 30353 (+)
Type: TC
Location: 27144 - 30353 (+)
Gene ID: HRGMv2_3870_1_18
Type: pfam
Location: 30375 - 32363 (+)
Type: pfam
Location: 30375 - 32363 (+)
Gene ID: HRGMv2_3870_1_19
Type: sulfatase
Location: 32445 - 33902 (+)
Type: sulfatase
Location: 32445 - 33902 (+)
Gene ID: HRGMv2_3870_1_20
Type: CAZyme
Location: 33899 - 35308 (+)
Type: CAZyme
Location: 33899 - 35308 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3870_1_17 | vegetarian > vegan | 1.71580 | 0.04511 |
| HRGMv2_3870_1_18 | vegetarian > vegan | 2.42924 | 0.02743 |