Cluster: HRGMv2_3868_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3868
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3868_3 | HRGMv2_3868_3_108 | 124346 | 126499 | + | CE17 |
| pfam | HRGMv2_3868_3 | HRGMv2_3868_3_109 | 126515 | 127516 | + | URO-D |
| pfam | HRGMv2_3868_3 | HRGMv2_3868_3_110 | 127530 | 128576 | + | URO-D |
| CAZyme | HRGMv2_3868_3 | HRGMv2_3868_3_111 | 128624 | 131311 | + | GH173 |
| STP | HRGMv2_3868_3 | HRGMv2_3868_3_112 | 131323 | 131961 | + | B12-binding | B12-binding_2 |
| peptidase | HRGMv2_3868_3 | HRGMv2_3868_3_113 | 131971 | 132960 | - | M24.UPA |
| TC | HRGMv2_3868_3 | HRGMv2_3868_3_114 | 133156 | 136260 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_3868_3_108
Type: CAZyme
Location: 124346 - 126499 (+)
Type: CAZyme
Location: 124346 - 126499 (+)
Gene ID: HRGMv2_3868_3_109
Type: pfam
Location: 126515 - 127516 (+)
Type: pfam
Location: 126515 - 127516 (+)
Gene ID: HRGMv2_3868_3_110
Type: pfam
Location: 127530 - 128576 (+)
Type: pfam
Location: 127530 - 128576 (+)
Gene ID: HRGMv2_3868_3_111
Type: CAZyme
Location: 128624 - 131311 (+)
Type: CAZyme
Location: 128624 - 131311 (+)
Gene ID: HRGMv2_3868_3_112
Type: STP
Location: 131323 - 131961 (+)
Type: STP
Location: 131323 - 131961 (+)
Gene ID: HRGMv2_3868_3_113
Type: peptidase
Location: 131971 - 132960 (-)
Type: peptidase
Location: 131971 - 132960 (-)
Gene ID: HRGMv2_3868_3_114
Type: TC
Location: 133156 - 136260 (+)
Type: TC
Location: 133156 - 136260 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.