Cluster: HRGMv2_3868_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3868
- CGC Family ID: CGCFAM_00068
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3868_6 | HRGMv2_3868_6_10 | 8648 | 12217 | - | GH31_15 |
| pfam | HRGMv2_3868_6 | HRGMv2_3868_6_11 | 12295 | 13620 | - | SusF_SusE |
| CAZyme | HRGMv2_3868_6 | HRGMv2_3868_6_12 | 13635 | 15755 | - | GH97 |
| CAZyme | HRGMv2_3868_6 | HRGMv2_3868_6_13 | 15802 | 17223 | - | GH27 |
| pfam | HRGMv2_3868_6 | HRGMv2_3868_6_14 | 17256 | 18812 | - | SusF_SusE | SusF_SusE | SusF_SusE | SusF_SusE |
| pfam | HRGMv2_3868_6 | HRGMv2_3868_6_15 | 18825 | 20561 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3868_6 | HRGMv2_3868_6_16 | 20583 | 23573 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3868_6_10
Type: CAZyme
Location: 8648 - 12217 (-)
Type: CAZyme
Location: 8648 - 12217 (-)
Gene ID: HRGMv2_3868_6_11
Type: pfam
Location: 12295 - 13620 (-)
Type: pfam
Location: 12295 - 13620 (-)
Gene ID: HRGMv2_3868_6_12
Type: CAZyme
Location: 13635 - 15755 (-)
Type: CAZyme
Location: 13635 - 15755 (-)
Gene ID: HRGMv2_3868_6_13
Type: CAZyme
Location: 15802 - 17223 (-)
Type: CAZyme
Location: 15802 - 17223 (-)
Gene ID: HRGMv2_3868_6_14
Type: pfam
Location: 17256 - 18812 (-)
Type: pfam
Location: 17256 - 18812 (-)
Gene ID: HRGMv2_3868_6_15
Type: pfam
Location: 18825 - 20561 (-)
Type: pfam
Location: 18825 - 20561 (-)
Gene ID: HRGMv2_3868_6_16
Type: TC
Location: 20583 - 23573 (-)
Type: TC
Location: 20583 - 23573 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.