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Cluster: HRGMv2_3868_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3868_5 HRGMv2_3868_5_52 68369 69214 + 1.A.28.1.5
pfam HRGMv2_3868_5 HRGMv2_3868_5_53 69395 70525 + TGT
TC HRGMv2_3868_5 HRGMv2_3868_5_54 70522 71616 + 1.B.42.1.13
pfam HRGMv2_3868_5 HRGMv2_3868_5_55 71675 72256 + Sod_Fe_N | Sod_Fe_C
CAZyme HRGMv2_3868_5 HRGMv2_3868_5_56 72341 74890 - GT35
CAZyme HRGMv2_3868_5 HRGMv2_3868_5_57 74924 76582 - GT3
TC HRGMv2_3868_5 HRGMv2_3868_5_58 76792 78138 - 2.A.2.6.2
TF HRGMv2_3868_5 HRGMv2_3868_5_59 78363 78977 + GerE
STP HRGMv2_3868_5 HRGMv2_3868_5_60 79148 80071 + FecR
TC HRGMv2_3868_5 HRGMv2_3868_5_61 80219 83785 + 1.B.14.6.1
Gene ID: HRGMv2_3868_5_52
Type: TC
Location: 68369 - 69214 (+)
Gene ID: HRGMv2_3868_5_53
Type: pfam
Location: 69395 - 70525 (+)
Gene ID: HRGMv2_3868_5_54
Type: TC
Location: 70522 - 71616 (+)
Gene ID: HRGMv2_3868_5_55
Type: pfam
Location: 71675 - 72256 (+)
Gene ID: HRGMv2_3868_5_56
Type: CAZyme
Location: 72341 - 74890 (-)
Gene ID: HRGMv2_3868_5_57
Type: CAZyme
Location: 74924 - 76582 (-)
Gene ID: HRGMv2_3868_5_58
Type: TC
Location: 76792 - 78138 (-)
Gene ID: HRGMv2_3868_5_59
Type: TF
Location: 78363 - 78977 (+)
Gene ID: HRGMv2_3868_5_60
Type: STP
Location: 79148 - 80071 (+)
Gene ID: HRGMv2_3868_5_61
Type: TC
Location: 80219 - 83785 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Limisoma
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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