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Cluster: HRGMv2_3865_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3865_1 HRGMv2_3865_1_1 1 1602 + GH66
TC HRGMv2_3865_1 HRGMv2_3865_1_2 2077 5163 + 1.B.14.6.1
pfam HRGMv2_3865_1 HRGMv2_3865_1_3 5184 7049 + SusD_RagB | SusD-like_3
pfam HRGMv2_3865_1 HRGMv2_3865_1_4 7064 8572 + SusE | SusF_SusE
CAZyme HRGMv2_3865_1 HRGMv2_3865_1_5 8592 10028 + GH27
NULL(UNKNOWN) HRGMv2_3865_1 HRGMv2_3865_1_6 10063 10911 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3865_1 HRGMv2_3865_1_7 11022 12614 + Mfa_like_1
CAZyme HRGMv2_3865_1 HRGMv2_3865_1_8 13038 14093 - GT4
Gene ID: HRGMv2_3865_1_1
Type: CAZyme
Location: 1 - 1602 (+)
Gene ID: HRGMv2_3865_1_2
Type: TC
Location: 2077 - 5163 (+)
Gene ID: HRGMv2_3865_1_3
Type: pfam
Location: 5184 - 7049 (+)
Gene ID: HRGMv2_3865_1_4
Type: pfam
Location: 7064 - 8572 (+)
Gene ID: HRGMv2_3865_1_5
Type: CAZyme
Location: 8592 - 10028 (+)
Gene ID: HRGMv2_3865_1_6
Type:
Location: 10063 - 10911 (+)
Gene ID: HRGMv2_3865_1_7
Type: pfam
Location: 11022 - 12614 (+)
Gene ID: HRGMv2_3865_1_8
Type: CAZyme
Location: 13038 - 14093 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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