Cluster: HRGMv2_3863_CGC33
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3863
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3863_87 | HRGMv2_3863_87_1 | 613 | 3048 | - | CBM4 | GH10 |
| pfam | HRGMv2_3863_87 | HRGMv2_3863_87_2 | 3106 | 4533 | - | SGBP_B_XBD |
| pfam | HRGMv2_3863_87 | HRGMv2_3863_87_3 | 4554 | 6299 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3863_87 | HRGMv2_3863_87_4 | 6312 | 9461 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3863_87 | HRGMv2_3863_87_5 | 9624 | 11234 | - | GH35 |
| CAZyme | HRGMv2_3863_87 | HRGMv2_3863_87_6 | 11314 | 13206 | - | GH67 |
Gene ID: HRGMv2_3863_87_1
Type: CAZyme
Location: 613 - 3048 (-)
Type: CAZyme
Location: 613 - 3048 (-)
Gene ID: HRGMv2_3863_87_2
Type: pfam
Location: 3106 - 4533 (-)
Type: pfam
Location: 3106 - 4533 (-)
Gene ID: HRGMv2_3863_87_3
Type: pfam
Location: 4554 - 6299 (-)
Type: pfam
Location: 4554 - 6299 (-)
Gene ID: HRGMv2_3863_87_4
Type: TC
Location: 6312 - 9461 (-)
Type: TC
Location: 6312 - 9461 (-)
Gene ID: HRGMv2_3863_87_5
Type: CAZyme
Location: 9624 - 11234 (-)
Type: CAZyme
Location: 9624 - 11234 (-)
Gene ID: HRGMv2_3863_87_6
Type: CAZyme
Location: 11314 - 13206 (-)
Type: CAZyme
Location: 11314 - 13206 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella lacticifex
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.