Cluster: HRGMv2_3863_CGC18
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3863
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3863_24 | HRGMv2_3863_24_7 | 7499 | 9247 | + | 3.A.1.135.5 |
| pfam | HRGMv2_3863_24 | HRGMv2_3863_24_8 | 9355 | 10254 | + | Thioredoxin | AhpC-TSA | SCO1-SenC | Redoxin | Thioredoxin_2 | Thioredoxin_8 |
| CAZyme | HRGMv2_3863_24 | HRGMv2_3863_24_9 | 10444 | 11709 | - | GH53 |
| CAZyme | HRGMv2_3863_24 | HRGMv2_3863_24_10 | 11912 | 13720 | - | GH13_6 |
| pfam | HRGMv2_3863_24 | HRGMv2_3863_24_11 | 14379 | 16148 | + | Transket_pyr | Transketolase_C | DXP_synthase_N | DXP_synthase_N |
| TC | HRGMv2_3863_24 | HRGMv2_3863_24_12 | 16254 | 16829 | - | 2.A.51.1.6 |
| pfam | HRGMv2_3863_24 | HRGMv2_3863_24_13 | 16826 | 17359 | - | Chromate_transp |
| peptidase | HRGMv2_3863_24 | HRGMv2_3863_24_14 | 17417 | 21121 | - | C56.972 |
| TC | HRGMv2_3863_24 | HRGMv2_3863_24_15 | 21350 | 22201 | - | 1.A.30.1.4 |
| CAZyme | HRGMv2_3863_24 | HRGMv2_3863_24_16 | 22377 | 25163 | - | PL1_2 |
| NULL(UNKNOWN) | HRGMv2_3863_24 | HRGMv2_3863_24_17 | 25765 | 26826 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3863_24 | HRGMv2_3863_24_18 | 27022 | 28767 | + | PL1_2 |
Gene ID: HRGMv2_3863_24_7
Type: TC
Location: 7499 - 9247 (+)
Type: TC
Location: 7499 - 9247 (+)
Gene ID: HRGMv2_3863_24_8
Type: pfam
Location: 9355 - 10254 (+)
Type: pfam
Location: 9355 - 10254 (+)
Gene ID: HRGMv2_3863_24_9
Type: CAZyme
Location: 10444 - 11709 (-)
Type: CAZyme
Location: 10444 - 11709 (-)
Gene ID: HRGMv2_3863_24_10
Type: CAZyme
Location: 11912 - 13720 (-)
Type: CAZyme
Location: 11912 - 13720 (-)
Gene ID: HRGMv2_3863_24_11
Type: pfam
Location: 14379 - 16148 (+)
Type: pfam
Location: 14379 - 16148 (+)
Gene ID: HRGMv2_3863_24_12
Type: TC
Location: 16254 - 16829 (-)
Type: TC
Location: 16254 - 16829 (-)
Gene ID: HRGMv2_3863_24_13
Type: pfam
Location: 16826 - 17359 (-)
Type: pfam
Location: 16826 - 17359 (-)
Gene ID: HRGMv2_3863_24_14
Type: peptidase
Location: 17417 - 21121 (-)
Type: peptidase
Location: 17417 - 21121 (-)
Gene ID: HRGMv2_3863_24_15
Type: TC
Location: 21350 - 22201 (-)
Type: TC
Location: 21350 - 22201 (-)
Gene ID: HRGMv2_3863_24_16
Type: CAZyme
Location: 22377 - 25163 (-)
Type: CAZyme
Location: 22377 - 25163 (-)
Gene ID: HRGMv2_3863_24_17
Type:
Location: 25765 - 26826 (-)
Type:
Location: 25765 - 26826 (-)
Gene ID: HRGMv2_3863_24_18
Type: CAZyme
Location: 27022 - 28767 (+)
Type: CAZyme
Location: 27022 - 28767 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella lacticifex
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.