Cluster: HRGMv2_3863_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3863
- CGC Family ID: CGCFAM_00146
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3863_22 | HRGMv2_3863_22_3 | 5221 | 6633 | + | 2.A.2.3.2 |
| CAZyme | HRGMv2_3863_22 | HRGMv2_3863_22_4 | 6630 | 7751 | + | GH10 |
| CAZyme | HRGMv2_3863_22 | HRGMv2_3863_22_5 | 7786 | 8757 | + | GH43_1 |
| NULL(UNKNOWN) | HRGMv2_3863_22 | HRGMv2_3863_22_6 | 8997 | 9182 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3863_22 | HRGMv2_3863_22_7 | 9186 | 9719 | + | Nitroreductase |
| TC | HRGMv2_3863_22 | HRGMv2_3863_22_8 | 10571 | 12046 | - | 2.A.103.1.2 |
Gene ID: HRGMv2_3863_22_3
Type: TC
Location: 5221 - 6633 (+)
Type: TC
Location: 5221 - 6633 (+)
Gene ID: HRGMv2_3863_22_4
Type: CAZyme
Location: 6630 - 7751 (+)
Type: CAZyme
Location: 6630 - 7751 (+)
Gene ID: HRGMv2_3863_22_5
Type: CAZyme
Location: 7786 - 8757 (+)
Type: CAZyme
Location: 7786 - 8757 (+)
Gene ID: HRGMv2_3863_22_6
Type:
Location: 8997 - 9182 (+)
Type:
Location: 8997 - 9182 (+)
Gene ID: HRGMv2_3863_22_7
Type: STP
Location: 9186 - 9719 (+)
Type: STP
Location: 9186 - 9719 (+)
Gene ID: HRGMv2_3863_22_8
Type: TC
Location: 10571 - 12046 (-)
Type: TC
Location: 10571 - 12046 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella lacticifex
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.