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Cluster: HRGMv2_3863_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3863_16 HRGMv2_3863_16_12 16254 16616 + 3.D.1.8.1
TC HRGMv2_3863_16 HRGMv2_3863_16_13 16607 17416 + 3.D.1.6.1
TC HRGMv2_3863_16 HRGMv2_3863_16_14 17416 18990 + 3.D.1.5.1
TC HRGMv2_3863_16 HRGMv2_3863_16_15 19032 20138 + 3.D.1.5.1
STP HRGMv2_3863_16 HRGMv2_3863_16_16 20224 20805 + Fer4 | Fer4
pfam HRGMv2_3863_16 HRGMv2_3863_16_17 20808 21362 + Oxidored_q3
TC HRGMv2_3863_16 HRGMv2_3863_16_18 21359 21667 + 3.D.9.1.1
TC HRGMv2_3863_16 HRGMv2_3863_16_19 21681 23708 + 3.D.9.1.1
TC HRGMv2_3863_16 HRGMv2_3863_16_20 23712 25229 + 3.D.1.5.1
TC HRGMv2_3863_16 HRGMv2_3863_16_21 25241 26707 + 3.D.1.8.1
pfam HRGMv2_3863_16 HRGMv2_3863_16_22 28481 29191 + adh_short | KR | adh_short_C2
TC HRGMv2_3863_16 HRGMv2_3863_16_23 29325 30704 + 2.A.115.2.14
pfam HRGMv2_3863_16 HRGMv2_3863_16_24 30712 31605 + EamA | EamA
CAZyme HRGMv2_3863_16 HRGMv2_3863_16_25 31750 34185 + GH2
Gene ID: HRGMv2_3863_16_12
Type: TC
Location: 16254 - 16616 (+)
Gene ID: HRGMv2_3863_16_13
Type: TC
Location: 16607 - 17416 (+)
Gene ID: HRGMv2_3863_16_14
Type: TC
Location: 17416 - 18990 (+)
Gene ID: HRGMv2_3863_16_15
Type: TC
Location: 19032 - 20138 (+)
Gene ID: HRGMv2_3863_16_16
Type: STP
Location: 20224 - 20805 (+)
Gene ID: HRGMv2_3863_16_17
Type: pfam
Location: 20808 - 21362 (+)
Gene ID: HRGMv2_3863_16_18
Type: TC
Location: 21359 - 21667 (+)
Gene ID: HRGMv2_3863_16_19
Type: TC
Location: 21681 - 23708 (+)
Gene ID: HRGMv2_3863_16_20
Type: TC
Location: 23712 - 25229 (+)
Gene ID: HRGMv2_3863_16_21
Type: TC
Location: 25241 - 26707 (+)
Gene ID: HRGMv2_3863_16_22
Type: pfam
Location: 28481 - 29191 (+)
Gene ID: HRGMv2_3863_16_23
Type: TC
Location: 29325 - 30704 (+)
Gene ID: HRGMv2_3863_16_24
Type: pfam
Location: 30712 - 31605 (+)
Gene ID: HRGMv2_3863_16_25
Type: CAZyme
Location: 31750 - 34185 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3863_16_20 vegetarian > vegan 1.10791 0.02254

🧭 Explore Read Mapping of CGC

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