Cluster: HRGMv2_3815_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3815
- CGC Family ID: CGCFAM_05116
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3815_2 | HRGMv2_3815_2_193 | 230574 | 231461 | - | 8.A.21.2.2 |
| pfam | HRGMv2_3815_2 | HRGMv2_3815_2_194 | 231477 | 231902 | - | NfeD |
| TC | HRGMv2_3815_2 | HRGMv2_3815_2_195 | 231899 | 232690 | - | 3.A.1.30.1 |
| CAZyme | HRGMv2_3815_2 | HRGMv2_3815_2_196 | 232725 | 233921 | - | GT5 |
| pfam | HRGMv2_3815_2 | HRGMv2_3815_2_197 | 234078 | 235256 | + | NTP_transferase | Hexapep_GlmU |
| TC | HRGMv2_3815_2 | HRGMv2_3815_2_198 | 235584 | 237197 | - | 3.A.1.120.3 |
Gene ID: HRGMv2_3815_2_193
Type: TC
Location: 230574 - 231461 (-)
Type: TC
Location: 230574 - 231461 (-)
Gene ID: HRGMv2_3815_2_194
Type: pfam
Location: 231477 - 231902 (-)
Type: pfam
Location: 231477 - 231902 (-)
Gene ID: HRGMv2_3815_2_195
Type: TC
Location: 231899 - 232690 (-)
Type: TC
Location: 231899 - 232690 (-)
Gene ID: HRGMv2_3815_2_196
Type: CAZyme
Location: 232725 - 233921 (-)
Type: CAZyme
Location: 232725 - 233921 (-)
Gene ID: HRGMv2_3815_2_197
Type: pfam
Location: 234078 - 235256 (+)
Type: pfam
Location: 234078 - 235256 (+)
Gene ID: HRGMv2_3815_2_198
Type: TC
Location: 235584 - 237197 (-)
Type: TC
Location: 235584 - 237197 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Winkia
Species
Winkia neuii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.