Cluster: HRGMv2_3815_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3815
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3815_2 | HRGMv2_3815_2_96 | 116435 | 117130 | + | GT2 |
| pfam | HRGMv2_3815_2 | HRGMv2_3815_2_97 | 117173 | 117538 | - | RbpA |
| pfam | HRGMv2_3815_2 | HRGMv2_3815_2_98 | 117634 | 118353 | - | TrmO_N | TrmO_C |
| TC | HRGMv2_3815_2 | HRGMv2_3815_2_99 | 118422 | 119633 | + | 2.A.1.67.1 |
| TC | HRGMv2_3815_2 | HRGMv2_3815_2_100 | 119712 | 121628 | + | 2.A.40.3.3 |
Gene ID: HRGMv2_3815_2_96
Type: CAZyme
Location: 116435 - 117130 (+)
Type: CAZyme
Location: 116435 - 117130 (+)
Gene ID: HRGMv2_3815_2_97
Type: pfam
Location: 117173 - 117538 (-)
Type: pfam
Location: 117173 - 117538 (-)
Gene ID: HRGMv2_3815_2_98
Type: pfam
Location: 117634 - 118353 (-)
Type: pfam
Location: 117634 - 118353 (-)
Gene ID: HRGMv2_3815_2_99
Type: TC
Location: 118422 - 119633 (+)
Type: TC
Location: 118422 - 119633 (+)
Gene ID: HRGMv2_3815_2_100
Type: TC
Location: 119712 - 121628 (+)
Type: TC
Location: 119712 - 121628 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Winkia
Species
Winkia neuii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.