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Cluster: HRGMv2_3815_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3815_13 HRGMv2_3815_13_8 11002 14016 + GH2
STP HRGMv2_3815_13 HRGMv2_3815_13_9 14176 15564 + SBP_bac_1
TC HRGMv2_3815_13 HRGMv2_3815_13_10 15633 16550 + 3.A.1.1.4
TC HRGMv2_3815_13 HRGMv2_3815_13_11 16550 17446 + 3.A.1.1.34
CAZyme HRGMv2_3815_13 HRGMv2_3815_13_12 17446 18783 + GH29
STP HRGMv2_3815_13 HRGMv2_3815_13_13 18919 19896 + Sigma70_r4
pfam HRGMv2_3815_13 HRGMv2_3815_13_14 19981 20631 + DeoC
TC HRGMv2_3815_13 HRGMv2_3815_13_15 20628 21992 + 2.A.1.7.5
Gene ID: HRGMv2_3815_13_8
Type: CAZyme
Location: 11002 - 14016 (+)
Gene ID: HRGMv2_3815_13_9
Type: STP
Location: 14176 - 15564 (+)
Gene ID: HRGMv2_3815_13_10
Type: TC
Location: 15633 - 16550 (+)
Gene ID: HRGMv2_3815_13_11
Type: TC
Location: 16550 - 17446 (+)
Gene ID: HRGMv2_3815_13_12
Type: CAZyme
Location: 17446 - 18783 (+)
Gene ID: HRGMv2_3815_13_13
Type: STP
Location: 18919 - 19896 (+)
Gene ID: HRGMv2_3815_13_14
Type: pfam
Location: 19981 - 20631 (+)
Gene ID: HRGMv2_3815_13_15
Type: TC
Location: 20628 - 21992 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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