Cluster: HRGMv2_3815_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3815
- CGC Family ID: CGCFAM_10463
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3815_10 | HRGMv2_3815_10_24 | 28507 | 30375 | - | GT2 |
| pfam | HRGMv2_3815_10 | HRGMv2_3815_10_25 | 30376 | 31356 | - | LytR_cpsA_psr |
| CAZyme | HRGMv2_3815_10 | HRGMv2_3815_10_26 | 31479 | 32744 | + | GT4 |
| pfam | HRGMv2_3815_10 | HRGMv2_3815_10_27 | 32721 | 33848 | - | DUF6270 |
| TC | HRGMv2_3815_10 | HRGMv2_3815_10_28 | 33898 | 34908 | + | 9.B.18.2.1 |
| pfam | HRGMv2_3815_10 | HRGMv2_3815_10_29 | 34895 | 36136 | - | DUF348 | DUF348 | G5 |
| CAZyme | HRGMv2_3815_10 | HRGMv2_3815_10_30 | 36146 | 37285 | - | GH23 |
Gene ID: HRGMv2_3815_10_24
Type: CAZyme
Location: 28507 - 30375 (-)
Type: CAZyme
Location: 28507 - 30375 (-)
Gene ID: HRGMv2_3815_10_25
Type: pfam
Location: 30376 - 31356 (-)
Type: pfam
Location: 30376 - 31356 (-)
Gene ID: HRGMv2_3815_10_26
Type: CAZyme
Location: 31479 - 32744 (+)
Type: CAZyme
Location: 31479 - 32744 (+)
Gene ID: HRGMv2_3815_10_27
Type: pfam
Location: 32721 - 33848 (-)
Type: pfam
Location: 32721 - 33848 (-)
Gene ID: HRGMv2_3815_10_28
Type: TC
Location: 33898 - 34908 (+)
Type: TC
Location: 33898 - 34908 (+)
Gene ID: HRGMv2_3815_10_29
Type: pfam
Location: 34895 - 36136 (-)
Type: pfam
Location: 34895 - 36136 (-)
Gene ID: HRGMv2_3815_10_30
Type: CAZyme
Location: 36146 - 37285 (-)
Type: CAZyme
Location: 36146 - 37285 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Winkia
Species
Winkia neuii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.