Cluster: HRGMv2_3815_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3815
- CGC Family ID: CGCFAM_00074
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3815_10 | HRGMv2_3815_10_16 | 18349 | 19998 | + | GT4 |
| pfam | HRGMv2_3815_10 | HRGMv2_3815_10_17 | 19998 | 20993 | + | ABC2_membrane |
| TC | HRGMv2_3815_10 | HRGMv2_3815_10_18 | 20977 | 21891 | + | 3.A.1.104.1 |
| NULL(UNKNOWN) | HRGMv2_3815_10 | HRGMv2_3815_10_19 | 21953 | 23134 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3815_10 | HRGMv2_3815_10_20 | 23115 | 25304 | - | GT2 |
Gene ID: HRGMv2_3815_10_16
Type: CAZyme
Location: 18349 - 19998 (+)
Type: CAZyme
Location: 18349 - 19998 (+)
Gene ID: HRGMv2_3815_10_17
Type: pfam
Location: 19998 - 20993 (+)
Type: pfam
Location: 19998 - 20993 (+)
Gene ID: HRGMv2_3815_10_18
Type: TC
Location: 20977 - 21891 (+)
Type: TC
Location: 20977 - 21891 (+)
Gene ID: HRGMv2_3815_10_19
Type:
Location: 21953 - 23134 (+)
Type:
Location: 21953 - 23134 (+)
Gene ID: HRGMv2_3815_10_20
Type: CAZyme
Location: 23115 - 25304 (-)
Type: CAZyme
Location: 23115 - 25304 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Winkia
Species
Winkia neuii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.