Cluster: HRGMv2_3815_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3815
- CGC Family ID: CGCFAM_00711
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3815_2 | HRGMv2_3815_2_23 | 31581 | 33293 | - | GH13_10 |
| CAZyme | HRGMv2_3815_2 | HRGMv2_3815_2_24 | 33280 | 35775 | - | GH13_26 |
| CAZyme | HRGMv2_3815_2 | HRGMv2_3815_2_25 | 35784 | 37946 | - | CBM48 | GH13_11 |
| TC | HRGMv2_3815_2 | HRGMv2_3815_2_26 | 38985 | 40046 | - | 3.A.1.1.38 |
| NULL(UNKNOWN) | HRGMv2_3815_2 | HRGMv2_3815_2_27 | 40031 | 41593 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3815_2 | HRGMv2_3815_2_28 | 41590 | 42573 | - | SBP_bac_1 |
| TC | HRGMv2_3815_2 | HRGMv2_3815_2_29 | 42624 | 44003 | - | 2.A.1.4.3 |
Gene ID: HRGMv2_3815_2_23
Type: CAZyme
Location: 31581 - 33293 (-)
Type: CAZyme
Location: 31581 - 33293 (-)
Gene ID: HRGMv2_3815_2_24
Type: CAZyme
Location: 33280 - 35775 (-)
Type: CAZyme
Location: 33280 - 35775 (-)
Gene ID: HRGMv2_3815_2_25
Type: CAZyme
Location: 35784 - 37946 (-)
Type: CAZyme
Location: 35784 - 37946 (-)
Gene ID: HRGMv2_3815_2_26
Type: TC
Location: 38985 - 40046 (-)
Type: TC
Location: 38985 - 40046 (-)
Gene ID: HRGMv2_3815_2_27
Type:
Location: 40031 - 41593 (-)
Type:
Location: 40031 - 41593 (-)
Gene ID: HRGMv2_3815_2_28
Type: STP
Location: 41590 - 42573 (-)
Type: STP
Location: 41590 - 42573 (-)
Gene ID: HRGMv2_3815_2_29
Type: TC
Location: 42624 - 44003 (-)
Type: TC
Location: 42624 - 44003 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Winkia
Species
Winkia neuii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.