Cluster: HRGMv2_3814_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3814
- CGC Family ID: CGCFAM_00021
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3814_69 | HRGMv2_3814_69_4 | 2039 | 3676 | + | 3.A.1.1.10 |
| CAZyme | HRGMv2_3814_69 | HRGMv2_3814_69_5 | 3959 | 5815 | + | GH13_31 |
| NULL(UNKNOWN) | HRGMv2_3814_69 | HRGMv2_3814_69_6 | 5984 | 6226 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3814_69 | HRGMv2_3814_69_7 | 6278 | 7006 | + | 3.A.1.1.10 |
| TC | HRGMv2_3814_69 | HRGMv2_3814_69_8 | 7113 | 7700 | + | 3.A.1.1.29 |
Gene ID: HRGMv2_3814_69_4
Type: TC
Location: 2039 - 3676 (+)
Type: TC
Location: 2039 - 3676 (+)
Gene ID: HRGMv2_3814_69_5
Type: CAZyme
Location: 3959 - 5815 (+)
Type: CAZyme
Location: 3959 - 5815 (+)
Gene ID: HRGMv2_3814_69_6
Type:
Location: 5984 - 6226 (+)
Type:
Location: 5984 - 6226 (+)
Gene ID: HRGMv2_3814_69_7
Type: TC
Location: 6278 - 7006 (+)
Type: TC
Location: 6278 - 7006 (+)
Gene ID: HRGMv2_3814_69_8
Type: TC
Location: 7113 - 7700 (+)
Type: TC
Location: 7113 - 7700 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Scardovia
Species
Scardovia denticolens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.