Cluster: HRGMv2_3814_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3814
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3814_46 | HRGMv2_3814_46_2 | 880 | 2193 | + | 3.A.1.1.23 |
| TC | HRGMv2_3814_46 | HRGMv2_3814_46_3 | 2330 | 3505 | + | 3.A.1.1.23 |
| TC | HRGMv2_3814_46 | HRGMv2_3814_46_4 | 3502 | 4449 | + | 3.A.1.1.23 |
| CAZyme | HRGMv2_3814_46 | HRGMv2_3814_46_5 | 4605 | 6011 | + | GH1 |
Gene ID: HRGMv2_3814_46_2
Type: TC
Location: 880 - 2193 (+)
Type: TC
Location: 880 - 2193 (+)
Gene ID: HRGMv2_3814_46_3
Type: TC
Location: 2330 - 3505 (+)
Type: TC
Location: 2330 - 3505 (+)
Gene ID: HRGMv2_3814_46_4
Type: TC
Location: 3502 - 4449 (+)
Type: TC
Location: 3502 - 4449 (+)
Gene ID: HRGMv2_3814_46_5
Type: CAZyme
Location: 4605 - 6011 (+)
Type: CAZyme
Location: 4605 - 6011 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Scardovia
Species
Scardovia denticolens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.