Cluster: HRGMv2_3814_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3814
- CGC Family ID: CGCFAM_00817
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3814_43 | HRGMv2_3814_43_6 | 5312 | 6271 | - | 3.A.1.1.20 |
| TC | HRGMv2_3814_43 | HRGMv2_3814_43_7 | 6306 | 7211 | - | 3.A.1.1.20 |
| pfam | HRGMv2_3814_43 | HRGMv2_3814_43_8 | 7221 | 8552 | - | SBP_bac_1 | SBP_bac_8 |
| TF | HRGMv2_3814_43 | HRGMv2_3814_43_9 | 8784 | 9851 | - | LacI |
| CAZyme | HRGMv2_3814_43 | HRGMv2_3814_43_10 | 9884 | 11554 | - | GH32 |
Gene ID: HRGMv2_3814_43_6
Type: TC
Location: 5312 - 6271 (-)
Type: TC
Location: 5312 - 6271 (-)
Gene ID: HRGMv2_3814_43_7
Type: TC
Location: 6306 - 7211 (-)
Type: TC
Location: 6306 - 7211 (-)
Gene ID: HRGMv2_3814_43_8
Type: pfam
Location: 7221 - 8552 (-)
Type: pfam
Location: 7221 - 8552 (-)
Gene ID: HRGMv2_3814_43_9
Type: TF
Location: 8784 - 9851 (-)
Type: TF
Location: 8784 - 9851 (-)
Gene ID: HRGMv2_3814_43_10
Type: CAZyme
Location: 9884 - 11554 (-)
Type: CAZyme
Location: 9884 - 11554 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Scardovia
Species
Scardovia denticolens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.