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Cluster: HRGMv2_3789_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3789_4 HRGMv2_3789_4_2 1149 4493 - GH92
pfam HRGMv2_3789_4 HRGMv2_3789_4_3 4915 5112 + zf-CHCC
CAZyme HRGMv2_3789_4 HRGMv2_3789_4_4 5128 6243 + GT4
pfam HRGMv2_3789_4 HRGMv2_3789_4_5 6224 7555 + Wzy_C
pfam HRGMv2_3789_4 HRGMv2_3789_4_6 7634 8551 - Lip_A_acyltrans
CAZyme HRGMv2_3789_4 HRGMv2_3789_4_7 8612 9910 + GT30
NULL(UNKNOWN) HRGMv2_3789_4 HRGMv2_3789_4_8 10127 11344 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3789_4 HRGMv2_3789_4_9 11432 12790 - 2.A.6.2.27
pfam HRGMv2_3789_4 HRGMv2_3789_4_10 12807 13454 - RrnaAD | PCMT | CMAS | Methyltransf_11 | Methyltransf_25
STP HRGMv2_3789_4 HRGMv2_3789_4_11 13591 14271 - TetR_N
TC HRGMv2_3789_4 HRGMv2_3789_4_12 14389 15519 + 2.A.6.2.27
TC HRGMv2_3789_4 HRGMv2_3789_4_13 15524 18685 + 2.A.6.2.17
Gene ID: HRGMv2_3789_4_2
Type: CAZyme
Location: 1149 - 4493 (-)
Gene ID: HRGMv2_3789_4_3
Type: pfam
Location: 4915 - 5112 (+)
Gene ID: HRGMv2_3789_4_4
Type: CAZyme
Location: 5128 - 6243 (+)
Gene ID: HRGMv2_3789_4_5
Type: pfam
Location: 6224 - 7555 (+)
Gene ID: HRGMv2_3789_4_6
Type: pfam
Location: 7634 - 8551 (-)
Gene ID: HRGMv2_3789_4_7
Type: CAZyme
Location: 8612 - 9910 (+)
Gene ID: HRGMv2_3789_4_8
Type:
Location: 10127 - 11344 (+)
Gene ID: HRGMv2_3789_4_9
Type: TC
Location: 11432 - 12790 (-)
Gene ID: HRGMv2_3789_4_10
Type: pfam
Location: 12807 - 13454 (-)
Gene ID: HRGMv2_3789_4_11
Type: STP
Location: 13591 - 14271 (-)
Gene ID: HRGMv2_3789_4_12
Type: TC
Location: 14389 - 15519 (+)
Gene ID: HRGMv2_3789_4_13
Type: TC
Location: 15524 - 18685 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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