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Cluster: HRGMv2_3784_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3784_45 HRGMv2_3784_45_3 1606 3423 - 3.A.1.106.2
pfam HRGMv2_3784_45 HRGMv2_3784_45_4 3860 5572 - Secretin
pfam HRGMv2_3784_45 HRGMv2_3784_45_5 5625 7043 - Secretin
CAZyme HRGMv2_3784_45 HRGMv2_3784_45_6 7384 8820 + GH39
pfam HRGMv2_3784_45 HRGMv2_3784_45_7 8888 9649 + SBP_bac_10
CAZyme HRGMv2_3784_45 HRGMv2_3784_45_8 9674 12334 + GH39
TF HRGMv2_3784_45 HRGMv2_3784_45_9 12390 13487 - HTH_AraC
pfam HRGMv2_3784_45 HRGMv2_3784_45_10 13581 14312 - SBP_bac_10
CAZyme HRGMv2_3784_45 HRGMv2_3784_45_11 14328 17540 - GH39
Gene ID: HRGMv2_3784_45_3
Type: TC
Location: 1606 - 3423 (-)
Gene ID: HRGMv2_3784_45_4
Type: pfam
Location: 3860 - 5572 (-)
Gene ID: HRGMv2_3784_45_5
Type: pfam
Location: 5625 - 7043 (-)
Gene ID: HRGMv2_3784_45_6
Type: CAZyme
Location: 7384 - 8820 (+)
Gene ID: HRGMv2_3784_45_7
Type: pfam
Location: 8888 - 9649 (+)
Gene ID: HRGMv2_3784_45_8
Type: CAZyme
Location: 9674 - 12334 (+)
Gene ID: HRGMv2_3784_45_9
Type: TF
Location: 12390 - 13487 (-)
Gene ID: HRGMv2_3784_45_10
Type: pfam
Location: 13581 - 14312 (-)
Gene ID: HRGMv2_3784_45_11
Type: CAZyme
Location: 14328 - 17540 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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