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Cluster: HRGMv2_3784_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3784_25 HRGMv2_3784_25_9 7803 9044 + CE7
CAZyme HRGMv2_3784_25 HRGMv2_3784_25_10 9055 10353 + CE7
CAZyme HRGMv2_3784_25 HRGMv2_3784_25_11 10372 11751 + GH57
TC HRGMv2_3784_25 HRGMv2_3784_25_12 11834 13129 - 1.A.23.4.5
pfam HRGMv2_3784_25 HRGMv2_3784_25_13 13309 14379 + tRNA_Me_trans | tRNA_Me_trans_C | tRNA_Me_trans_M
pfam HRGMv2_3784_25 HRGMv2_3784_25_14 14379 15440 + Radical_SAM
CAZyme HRGMv2_3784_25 HRGMv2_3784_25_15 15437 17203 + GH36
peptidase HRGMv2_3784_25 HRGMv2_3784_25_16 17242 19419 - U32.UPW
CAZyme HRGMv2_3784_25 HRGMv2_3784_25_17 19529 20650 - GH179
Gene ID: HRGMv2_3784_25_9
Type: CAZyme
Location: 7803 - 9044 (+)
Gene ID: HRGMv2_3784_25_10
Type: CAZyme
Location: 9055 - 10353 (+)
Gene ID: HRGMv2_3784_25_11
Type: CAZyme
Location: 10372 - 11751 (+)
Gene ID: HRGMv2_3784_25_12
Type: TC
Location: 11834 - 13129 (-)
Gene ID: HRGMv2_3784_25_13
Type: pfam
Location: 13309 - 14379 (+)
Gene ID: HRGMv2_3784_25_14
Type: pfam
Location: 14379 - 15440 (+)
Gene ID: HRGMv2_3784_25_15
Type: CAZyme
Location: 15437 - 17203 (+)
Gene ID: HRGMv2_3784_25_16
Type: peptidase
Location: 17242 - 19419 (-)
Gene ID: HRGMv2_3784_25_17
Type: CAZyme
Location: 19529 - 20650 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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