Cluster: HRGMv2_3784_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3784
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3784_16 | HRGMv2_3784_16_29 | 33878 | 34981 | + | 3.A.1.1.22 |
| TF | HRGMv2_3784_16 | HRGMv2_3784_16_30 | 35033 | 35899 | - | HTH_AraC |
| CAZyme | HRGMv2_3784_16 | HRGMv2_3784_16_31 | 36139 | 37731 | + | GT2 |
| pfam | HRGMv2_3784_16 | HRGMv2_3784_16_32 | 37728 | 38507 | + | N_methyl |
| CAZyme | HRGMv2_3784_16 | HRGMv2_3784_16_33 | 38513 | 40933 | + | GH5 |
Gene ID: HRGMv2_3784_16_29
Type: TC
Location: 33878 - 34981 (+)
Type: TC
Location: 33878 - 34981 (+)
Gene ID: HRGMv2_3784_16_30
Type: TF
Location: 35033 - 35899 (-)
Type: TF
Location: 35033 - 35899 (-)
Gene ID: HRGMv2_3784_16_31
Type: CAZyme
Location: 36139 - 37731 (+)
Type: CAZyme
Location: 36139 - 37731 (+)
Gene ID: HRGMv2_3784_16_32
Type: pfam
Location: 37728 - 38507 (+)
Type: pfam
Location: 37728 - 38507 (+)
Gene ID: HRGMv2_3784_16_33
Type: CAZyme
Location: 38513 - 40933 (+)
Type: CAZyme
Location: 38513 - 40933 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
UBA1829
Genus
UBA1829
Species
UBA1829 sp002338895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3784_16_29 | vegetarian > omnivore | 1.31336 | 0.00861 |
| HRGMv2_3784_16_29 | vegetarian > vegan | 1.25625 | 0.01708 |