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Cluster: HRGMv2_3780_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3780_16 HRGMv2_3780_16_7 7988 9307 + CE17
NULL(UNKNOWN) HRGMv2_3780_16 HRGMv2_3780_16_8 9576 12230 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3780_16 HRGMv2_3780_16_9 12304 12636 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3780_16 HRGMv2_3780_16_10 12922 15999 - GH148 | GH148
pfam HRGMv2_3780_16 HRGMv2_3780_16_11 16035 16796 - N_methyl
TF HRGMv2_3780_16 HRGMv2_3780_16_12 16940 17782 + 0035607
TC HRGMv2_3780_16 HRGMv2_3780_16_13 17831 20956 - 2.A.6.2.16
TC HRGMv2_3780_16 HRGMv2_3780_16_14 20953 22077 - 2.A.6.2.44
Gene ID: HRGMv2_3780_16_7
Type: CAZyme
Location: 7988 - 9307 (+)
Gene ID: HRGMv2_3780_16_8
Type:
Location: 9576 - 12230 (+)
Gene ID: HRGMv2_3780_16_9
Type:
Location: 12304 - 12636 (-)
Gene ID: HRGMv2_3780_16_10
Type: CAZyme
Location: 12922 - 15999 (-)
Gene ID: HRGMv2_3780_16_11
Type: pfam
Location: 16035 - 16796 (-)
Gene ID: HRGMv2_3780_16_12
Type: TF
Location: 16940 - 17782 (+)
Gene ID: HRGMv2_3780_16_13
Type: TC
Location: 17831 - 20956 (-)
Gene ID: HRGMv2_3780_16_14
Type: TC
Location: 20953 - 22077 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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