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Cluster: HRGMv2_3772_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3772_40 HRGMv2_3772_40_8 6595 7986 - 3.B.1.1.1
TC HRGMv2_3772_40 HRGMv2_3772_40_9 8072 8479 - 3.B.1.1.2
pfam HRGMv2_3772_40 HRGMv2_3772_40_10 8628 9026 - OAD_gamma
TC HRGMv2_3772_40 HRGMv2_3772_40_11 9036 10601 - 3.B.1.1.5
STP HRGMv2_3772_40 HRGMv2_3772_40_12 10637 11101 - Glyoxalase
pfam HRGMv2_3772_40 HRGMv2_3772_40_13 11271 11732 + Ribosomal_L19
TC HRGMv2_3772_40 HRGMv2_3772_40_14 11920 12906 + 3.A.1.105.4
TC HRGMv2_3772_40 HRGMv2_3772_40_15 12914 14686 + 3.A.1.105.4
TC HRGMv2_3772_40 HRGMv2_3772_40_16 14683 15792 + 3.A.1.105.4
TC HRGMv2_3772_40 HRGMv2_3772_40_17 15792 16910 + 3.A.1.105.4
pfam HRGMv2_3772_40 HRGMv2_3772_40_18 16967 19645 - tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | Val_tRNA-synt_C | tRNA-synt_1_2
TC HRGMv2_3772_40 HRGMv2_3772_40_19 20008 20328 + 2.A.64.5.1
pfam HRGMv2_3772_40 HRGMv2_3772_40_20 20503 22662 + GDE_C
CAZyme HRGMv2_3772_40 HRGMv2_3772_40_21 22712 24595 + CBM51
Gene ID: HRGMv2_3772_40_8
Type: TC
Location: 6595 - 7986 (-)
Gene ID: HRGMv2_3772_40_9
Type: TC
Location: 8072 - 8479 (-)
Gene ID: HRGMv2_3772_40_10
Type: pfam
Location: 8628 - 9026 (-)
Gene ID: HRGMv2_3772_40_11
Type: TC
Location: 9036 - 10601 (-)
Gene ID: HRGMv2_3772_40_12
Type: STP
Location: 10637 - 11101 (-)
Gene ID: HRGMv2_3772_40_13
Type: pfam
Location: 11271 - 11732 (+)
Gene ID: HRGMv2_3772_40_14
Type: TC
Location: 11920 - 12906 (+)
Gene ID: HRGMv2_3772_40_15
Type: TC
Location: 12914 - 14686 (+)
Gene ID: HRGMv2_3772_40_16
Type: TC
Location: 14683 - 15792 (+)
Gene ID: HRGMv2_3772_40_17
Type: TC
Location: 15792 - 16910 (+)
Gene ID: HRGMv2_3772_40_18
Type: pfam
Location: 16967 - 19645 (-)
Gene ID: HRGMv2_3772_40_19
Type: TC
Location: 20008 - 20328 (+)
Gene ID: HRGMv2_3772_40_20
Type: pfam
Location: 20503 - 22662 (+)
Gene ID: HRGMv2_3772_40_21
Type: CAZyme
Location: 22712 - 24595 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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