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Cluster: HRGMv2_3772_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3772_1 HRGMv2_3772_1_94 113074 113871 + 1.A.30.2.9
pfam HRGMv2_3772_1 HRGMv2_3772_1_95 113909 114361 + ExbD
pfam HRGMv2_3772_1 HRGMv2_3772_1_96 114358 116811 + TPR_6 | TPR_6 | TPR_6 | TPR_8 | TPR_8 | TPR_16 | TPR_16 | TPR_16
CAZyme HRGMv2_3772_1 HRGMv2_3772_1_97 116840 118714 + GT51
pfam HRGMv2_3772_1 HRGMv2_3772_1_98 118736 119503 + Inositol_P
pfam HRGMv2_3772_1 HRGMv2_3772_1_99 119525 120043 + YgbB
TC HRGMv2_3772_1 HRGMv2_3772_1_100 120127 121500 - 1.I.1.1.3
Gene ID: HRGMv2_3772_1_94
Type: TC
Location: 113074 - 113871 (+)
Gene ID: HRGMv2_3772_1_95
Type: pfam
Location: 113909 - 114361 (+)
Gene ID: HRGMv2_3772_1_96
Type: pfam
Location: 114358 - 116811 (+)
Gene ID: HRGMv2_3772_1_97
Type: CAZyme
Location: 116840 - 118714 (+)
Gene ID: HRGMv2_3772_1_98
Type: pfam
Location: 118736 - 119503 (+)
Gene ID: HRGMv2_3772_1_99
Type: pfam
Location: 119525 - 120043 (+)
Gene ID: HRGMv2_3772_1_100
Type: TC
Location: 120127 - 121500 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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