Cluster: HRGMv2_3772_CGC37
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_3772
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3772_29 | HRGMv2_3772_29_1 | 3 | 863 | + | 3.A.1.4.10 |
| TF | HRGMv2_3772_29 | HRGMv2_3772_29_2 | 890 | 1558 | + | GntR |
| NULL(UNKNOWN) | HRGMv2_3772_29 | HRGMv2_3772_29_3 | 1707 | 1928 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3772_29 | HRGMv2_3772_29_4 | 2094 | 3488 | + | GH29 |
| TC | HRGMv2_3772_29 | HRGMv2_3772_29_5 | 3660 | 4847 | + | 2.A.6.2.47 |
| TC | HRGMv2_3772_29 | HRGMv2_3772_29_6 | 4884 | 8015 | + | 2.A.6.2.16 |
| pfam | HRGMv2_3772_29 | HRGMv2_3772_29_7 | 8040 | 10523 | - | Metallophos | PQQ | PQQ | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | MetallophosN |
| NULL(UNKNOWN) | HRGMv2_3772_29 | HRGMv2_3772_29_8 | 10631 | 10870 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3772_29 | HRGMv2_3772_29_9 | 10963 | 13863 | + | CBM32 | GH2 |
| CAZyme | HRGMv2_3772_29 | HRGMv2_3772_29_10 | 13884 | 16238 | + | GH35 |
| NULL(UNKNOWN) | HRGMv2_3772_29 | HRGMv2_3772_29_11 | 16429 | 16884 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3772_29 | HRGMv2_3772_29_12 | 16906 | 17538 | - | GyrI-like |
| CAZyme | HRGMv2_3772_29 | HRGMv2_3772_29_13 | 17637 | 20084 | - | GH2 |
| NULL(UNKNOWN) | HRGMv2_3772_29 | HRGMv2_3772_29_14 | 20232 | 20393 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3772_29 | HRGMv2_3772_29_15 | 20396 | 22381 | + | GH51_2 |
Gene ID: HRGMv2_3772_29_1
Type: TC
Location: 3 - 863 (+)
Type: TC
Location: 3 - 863 (+)
Gene ID: HRGMv2_3772_29_2
Type: TF
Location: 890 - 1558 (+)
Type: TF
Location: 890 - 1558 (+)
Gene ID: HRGMv2_3772_29_3
Type:
Location: 1707 - 1928 (+)
Type:
Location: 1707 - 1928 (+)
Gene ID: HRGMv2_3772_29_4
Type: CAZyme
Location: 2094 - 3488 (+)
Type: CAZyme
Location: 2094 - 3488 (+)
Gene ID: HRGMv2_3772_29_5
Type: TC
Location: 3660 - 4847 (+)
Type: TC
Location: 3660 - 4847 (+)
Gene ID: HRGMv2_3772_29_6
Type: TC
Location: 4884 - 8015 (+)
Type: TC
Location: 4884 - 8015 (+)
Gene ID: HRGMv2_3772_29_7
Type: pfam
Location: 8040 - 10523 (-)
Type: pfam
Location: 8040 - 10523 (-)
Gene ID: HRGMv2_3772_29_8
Type:
Location: 10631 - 10870 (-)
Type:
Location: 10631 - 10870 (-)
Gene ID: HRGMv2_3772_29_9
Type: CAZyme
Location: 10963 - 13863 (+)
Type: CAZyme
Location: 10963 - 13863 (+)
Gene ID: HRGMv2_3772_29_10
Type: CAZyme
Location: 13884 - 16238 (+)
Type: CAZyme
Location: 13884 - 16238 (+)
Gene ID: HRGMv2_3772_29_11
Type:
Location: 16429 - 16884 (+)
Type:
Location: 16429 - 16884 (+)
Gene ID: HRGMv2_3772_29_12
Type: STP
Location: 16906 - 17538 (-)
Type: STP
Location: 16906 - 17538 (-)
Gene ID: HRGMv2_3772_29_13
Type: CAZyme
Location: 17637 - 20084 (-)
Type: CAZyme
Location: 17637 - 20084 (-)
Gene ID: HRGMv2_3772_29_14
Type:
Location: 20232 - 20393 (+)
Type:
Location: 20232 - 20393 (+)
Gene ID: HRGMv2_3772_29_15
Type: CAZyme
Location: 20396 - 22381 (+)
Type: CAZyme
Location: 20396 - 22381 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia sp900545155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.