Cluster: HRGMv2_3772_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3772
- CGC Family ID: CGCFAM_00013
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3772_1 | HRGMv2_3772_1_67 | 83002 | 84105 | + | 9.B.146.1.6 |
| pfam | HRGMv2_3772_1 | HRGMv2_3772_1_68 | 84110 | 85417 | + | Mur_ligase_C | Mur_ligase_M |
| pfam | HRGMv2_3772_1 | HRGMv2_3772_1_69 | 85431 | 86360 | + | LysM | LysM |
| TC | HRGMv2_3772_1 | HRGMv2_3772_1_70 | 86385 | 87527 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_3772_1 | HRGMv2_3772_1_71 | 87524 | 88642 | + | GT28 |
Gene ID: HRGMv2_3772_1_67
Type: TC
Location: 83002 - 84105 (+)
Type: TC
Location: 83002 - 84105 (+)
Gene ID: HRGMv2_3772_1_68
Type: pfam
Location: 84110 - 85417 (+)
Type: pfam
Location: 84110 - 85417 (+)
Gene ID: HRGMv2_3772_1_69
Type: pfam
Location: 85431 - 86360 (+)
Type: pfam
Location: 85431 - 86360 (+)
Gene ID: HRGMv2_3772_1_70
Type: TC
Location: 86385 - 87527 (+)
Type: TC
Location: 86385 - 87527 (+)
Gene ID: HRGMv2_3772_1_71
Type: CAZyme
Location: 87524 - 88642 (+)
Type: CAZyme
Location: 87524 - 88642 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia sp900545155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.