Cluster: HRGMv2_3764_CGC31
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3764
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3764_19 | HRGMv2_3764_19_32 | 35009 | 36613 | + | 3.D.10.1.1 |
| NULL(UNKNOWN) | HRGMv2_3764_19 | HRGMv2_3764_19_33 | 36607 | 37632 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3764_19 | HRGMv2_3764_19_34 | 37653 | 38861 | + | GT4 |
| pfam | HRGMv2_3764_19 | HRGMv2_3764_19_35 | 38858 | 40054 | + | Glyco_trans_1_4 |
| TC | HRGMv2_3764_19 | HRGMv2_3764_19_36 | 40051 | 41949 | - | 2.A.16.2.2 |
Gene ID: HRGMv2_3764_19_32
Type: TC
Location: 35009 - 36613 (+)
Type: TC
Location: 35009 - 36613 (+)
Gene ID: HRGMv2_3764_19_33
Type:
Location: 36607 - 37632 (+)
Type:
Location: 36607 - 37632 (+)
Gene ID: HRGMv2_3764_19_34
Type: CAZyme
Location: 37653 - 38861 (+)
Type: CAZyme
Location: 37653 - 38861 (+)
Gene ID: HRGMv2_3764_19_35
Type: pfam
Location: 38858 - 40054 (+)
Type: pfam
Location: 38858 - 40054 (+)
Gene ID: HRGMv2_3764_19_36
Type: TC
Location: 40051 - 41949 (-)
Type: TC
Location: 40051 - 41949 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.