Cluster: HRGMv2_3764_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3764
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3764_15 | HRGMv2_3764_15_45 | 51807 | 52748 | - | GH16_3 |
| TC | HRGMv2_3764_15 | HRGMv2_3764_15_46 | 52928 | 55171 | + | 3.A.3.5.15 |
| pfam | HRGMv2_3764_15 | HRGMv2_3764_15_47 | 55206 | 56864 | - | SMC_N | AAA_23 |
| pfam | HRGMv2_3764_15 | HRGMv2_3764_15_48 | 56917 | 57702 | + | Lactamase_B | Lactamase_B_2 | Lactamase_B_3 |
| CAZyme | HRGMv2_3764_15 | HRGMv2_3764_15_49 | 57702 | 58523 | + | GT26 |
Gene ID: HRGMv2_3764_15_45
Type: CAZyme
Location: 51807 - 52748 (-)
Type: CAZyme
Location: 51807 - 52748 (-)
Gene ID: HRGMv2_3764_15_46
Type: TC
Location: 52928 - 55171 (+)
Type: TC
Location: 52928 - 55171 (+)
Gene ID: HRGMv2_3764_15_47
Type: pfam
Location: 55206 - 56864 (-)
Type: pfam
Location: 55206 - 56864 (-)
Gene ID: HRGMv2_3764_15_48
Type: pfam
Location: 56917 - 57702 (+)
Type: pfam
Location: 56917 - 57702 (+)
Gene ID: HRGMv2_3764_15_49
Type: CAZyme
Location: 57702 - 58523 (+)
Type: CAZyme
Location: 57702 - 58523 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.