Cluster: HRGMv2_3764_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3764
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3764_13 | HRGMv2_3764_13_1 | 2 | 1303 | + | GT4 |
| CAZyme | HRGMv2_3764_13 | HRGMv2_3764_13_2 | 1418 | 2416 | + | GT10 |
| TC | HRGMv2_3764_13 | HRGMv2_3764_13_3 | 2498 | 4570 | + | 9.B.97.5.1 |
| CAZyme | HRGMv2_3764_13 | HRGMv2_3764_13_4 | 4732 | 5763 | + | GT10 |
| NULL(UNKNOWN) | HRGMv2_3764_13 | HRGMv2_3764_13_5 | 5930 | 6163 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3764_13 | HRGMv2_3764_13_6 | 6287 | 8215 | - | 2.A.47.4.8 |
Gene ID: HRGMv2_3764_13_1
Type: CAZyme
Location: 2 - 1303 (+)
Type: CAZyme
Location: 2 - 1303 (+)
Gene ID: HRGMv2_3764_13_2
Type: CAZyme
Location: 1418 - 2416 (+)
Type: CAZyme
Location: 1418 - 2416 (+)
Gene ID: HRGMv2_3764_13_3
Type: TC
Location: 2498 - 4570 (+)
Type: TC
Location: 2498 - 4570 (+)
Gene ID: HRGMv2_3764_13_4
Type: CAZyme
Location: 4732 - 5763 (+)
Type: CAZyme
Location: 4732 - 5763 (+)
Gene ID: HRGMv2_3764_13_5
Type:
Location: 5930 - 6163 (-)
Type:
Location: 5930 - 6163 (-)
Gene ID: HRGMv2_3764_13_6
Type: TC
Location: 6287 - 8215 (-)
Type: TC
Location: 6287 - 8215 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3764_13_5 | vegetarian > vegan | 1.18224 | 0.00565 |