Cluster: HRGMv2_3764_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3764
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3764_11 | HRGMv2_3764_11_12 | 9051 | 10172 | + | GT19 |
| pfam | HRGMv2_3764_11 | HRGMv2_3764_11_13 | 10557 | 11912 | - | ELFV_dehydrog | ELFV_dehydrog_N |
| pfam | HRGMv2_3764_11 | HRGMv2_3764_11_14 | 12562 | 13572 | - | Y1_Tnp |
| TC | HRGMv2_3764_11 | HRGMv2_3764_11_15 | 14018 | 15808 | - | 2.A.49.5.3 |
Gene ID: HRGMv2_3764_11_12
Type: CAZyme
Location: 9051 - 10172 (+)
Type: CAZyme
Location: 9051 - 10172 (+)
Gene ID: HRGMv2_3764_11_13
Type: pfam
Location: 10557 - 11912 (-)
Type: pfam
Location: 10557 - 11912 (-)
Gene ID: HRGMv2_3764_11_14
Type: pfam
Location: 12562 - 13572 (-)
Type: pfam
Location: 12562 - 13572 (-)
Gene ID: HRGMv2_3764_11_15
Type: TC
Location: 14018 - 15808 (-)
Type: TC
Location: 14018 - 15808 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3764_11_12 | vegetarian > vegan | 1.10981 | 0.00565 |
| HRGMv2_3764_11_15 | vegetarian > vegan | 1.04389 | 0.00565 |