Cluster: HRGMv2_3764_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3764
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3764_1 | HRGMv2_3764_1_20 | 20808 | 21590 | + | 1.A.30.2.9 |
| pfam | HRGMv2_3764_1 | HRGMv2_3764_1_21 | 21630 | 22076 | + | ExbD |
| STP | HRGMv2_3764_1 | HRGMv2_3764_1_22 | 22073 | 24505 | + | TPR_2 |
| CAZyme | HRGMv2_3764_1 | HRGMv2_3764_1_23 | 24530 | 26323 | + | GT51 |
Gene ID: HRGMv2_3764_1_20
Type: TC
Location: 20808 - 21590 (+)
Type: TC
Location: 20808 - 21590 (+)
Gene ID: HRGMv2_3764_1_21
Type: pfam
Location: 21630 - 22076 (+)
Type: pfam
Location: 21630 - 22076 (+)
Gene ID: HRGMv2_3764_1_22
Type: STP
Location: 22073 - 24505 (+)
Type: STP
Location: 22073 - 24505 (+)
Gene ID: HRGMv2_3764_1_23
Type: CAZyme
Location: 24530 - 26323 (+)
Type: CAZyme
Location: 24530 - 26323 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.