dbCAN Logo

Cluster: HRGMv2_3764_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3764_9 HRGMv2_3764_9_24 28039 28371 - 2.A.7.1.11
pfam HRGMv2_3764_9 HRGMv2_3764_9_25 28433 29656 - Sacchrp_dh_NADP | Sacchrp_dh_C
pfam HRGMv2_3764_9 HRGMv2_3764_9_26 29783 30832 + Thioredoxin | Thioredoxin_2 | Thioredoxin_7
CAZyme HRGMv2_3764_9 HRGMv2_3764_9_27 31159 33249 - GH29
TC HRGMv2_3764_9 HRGMv2_3764_9_28 33579 35438 + 3.A.1.5.1
TC HRGMv2_3764_9 HRGMv2_3764_9_29 35444 36358 + 3.A.1.5.1
TC HRGMv2_3764_9 HRGMv2_3764_9_30 36355 37311 + 3.A.1.5.22
TC HRGMv2_3764_9 HRGMv2_3764_9_31 37330 37692 + 2.A.7.34.1
NULL(UNKNOWN) HRGMv2_3764_9 HRGMv2_3764_9_32 37828 37932 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3764_9 HRGMv2_3764_9_33 38271 39422 + tRNA-synt_1b
TC HRGMv2_3764_9 HRGMv2_3764_9_34 39459 40439 + 2.A.28.3.4
Gene ID: HRGMv2_3764_9_24
Type: TC
Location: 28039 - 28371 (-)
Gene ID: HRGMv2_3764_9_25
Type: pfam
Location: 28433 - 29656 (-)
Gene ID: HRGMv2_3764_9_26
Type: pfam
Location: 29783 - 30832 (+)
Gene ID: HRGMv2_3764_9_27
Type: CAZyme
Location: 31159 - 33249 (-)
Gene ID: HRGMv2_3764_9_28
Type: TC
Location: 33579 - 35438 (+)
Gene ID: HRGMv2_3764_9_29
Type: TC
Location: 35444 - 36358 (+)
Gene ID: HRGMv2_3764_9_30
Type: TC
Location: 36355 - 37311 (+)
Gene ID: HRGMv2_3764_9_31
Type: TC
Location: 37330 - 37692 (+)
Gene ID: HRGMv2_3764_9_32
Type:
Location: 37828 - 37932 (+)
Gene ID: HRGMv2_3764_9_33
Type: pfam
Location: 38271 - 39422 (+)
Gene ID: HRGMv2_3764_9_34
Type: TC
Location: 39459 - 40439 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List