Cluster: HRGMv2_3764_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3764
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3764_5 | HRGMv2_3764_5_28 | 21548 | 22198 | - | 1.A.30.3.3 |
| NULL(UNKNOWN) | HRGMv2_3764_5 | HRGMv2_3764_5_29 | 22254 | 22979 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3764_5 | HRGMv2_3764_5_30 | 23158 | 24276 | + | Rotamase | Rotamase_2 | Rotamase_3 | SurA_N_2 | SurA_N_3 |
| CAZyme | HRGMv2_3764_5 | HRGMv2_3764_5_31 | 24574 | 27534 | + | CBM32 | GH2 |
Gene ID: HRGMv2_3764_5_28
Type: TC
Location: 21548 - 22198 (-)
Type: TC
Location: 21548 - 22198 (-)
Gene ID: HRGMv2_3764_5_29
Type:
Location: 22254 - 22979 (-)
Type:
Location: 22254 - 22979 (-)
Gene ID: HRGMv2_3764_5_30
Type: pfam
Location: 23158 - 24276 (+)
Type: pfam
Location: 23158 - 24276 (+)
Gene ID: HRGMv2_3764_5_31
Type: CAZyme
Location: 24574 - 27534 (+)
Type: CAZyme
Location: 24574 - 27534 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.