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Cluster: HRGMv2_3754_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3754_162 HRGMv2_3754_162_12 13479 15104 + GT83
pfam HRGMv2_3754_162 HRGMv2_3754_162_13 15140 16492 + SLH | SLH | SLH
NULL(UNKNOWN) HRGMv2_3754_162 HRGMv2_3754_162_14 16571 17461 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3754_162 HRGMv2_3754_162_15 17689 19785 + 2.A.67.4.1
NULL(UNKNOWN) HRGMv2_3754_162 HRGMv2_3754_162_16 19835 20032 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3754_162 HRGMv2_3754_162_17 20134 21768 - IMS | IMS_C
TC HRGMv2_3754_162 HRGMv2_3754_162_18 21975 22673 - 1.A.14.2.2
TC HRGMv2_3754_162 HRGMv2_3754_162_19 22814 23668 - 8.A.5.1.4
Gene ID: HRGMv2_3754_162_12
Type: CAZyme
Location: 13479 - 15104 (+)
Gene ID: HRGMv2_3754_162_13
Type: pfam
Location: 15140 - 16492 (+)
Gene ID: HRGMv2_3754_162_14
Type:
Location: 16571 - 17461 (-)
Gene ID: HRGMv2_3754_162_15
Type: TC
Location: 17689 - 19785 (+)
Gene ID: HRGMv2_3754_162_16
Type:
Location: 19835 - 20032 (-)
Gene ID: HRGMv2_3754_162_17
Type: pfam
Location: 20134 - 21768 (-)
Gene ID: HRGMv2_3754_162_18
Type: TC
Location: 21975 - 22673 (-)
Gene ID: HRGMv2_3754_162_19
Type: TC
Location: 22814 - 23668 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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