Cluster: HRGMv2_3704_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3704
- CGC Family ID: CGCFAM_02242
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3704_42 | HRGMv2_3704_42_136 | 140021 | 142453 | + | GT35 |
| CAZyme | HRGMv2_3704_42 | HRGMv2_3704_42_137 | 142472 | 144409 | + | CBM48 | GH13_9 |
| CAZyme | HRGMv2_3704_42 | HRGMv2_3704_42_138 | 144564 | 146000 | + | GT5 |
| CAZyme | HRGMv2_3704_42 | HRGMv2_3704_42_139 | 146072 | 149461 | + | GH13_39 | GH77 |
| pfam | HRGMv2_3704_42 | HRGMv2_3704_42_140 | 149568 | 151229 | + | AAA_15 | AAA_21 | OLD-like_TOPRIM |
| TC | HRGMv2_3704_42 | HRGMv2_3704_42_141 | 151333 | 153465 | + | 3.A.7.7.1 |
Gene ID: HRGMv2_3704_42_136
Type: CAZyme
Location: 140021 - 142453 (+)
Type: CAZyme
Location: 140021 - 142453 (+)
Gene ID: HRGMv2_3704_42_137
Type: CAZyme
Location: 142472 - 144409 (+)
Type: CAZyme
Location: 142472 - 144409 (+)
Gene ID: HRGMv2_3704_42_138
Type: CAZyme
Location: 144564 - 146000 (+)
Type: CAZyme
Location: 144564 - 146000 (+)
Gene ID: HRGMv2_3704_42_139
Type: CAZyme
Location: 146072 - 149461 (+)
Type: CAZyme
Location: 146072 - 149461 (+)
Gene ID: HRGMv2_3704_42_140
Type: pfam
Location: 149568 - 151229 (+)
Type: pfam
Location: 149568 - 151229 (+)
Gene ID: HRGMv2_3704_42_141
Type: TC
Location: 151333 - 153465 (+)
Type: TC
Location: 151333 - 153465 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera sp002319965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.