Cluster: HRGMv2_3678_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3678
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3678_10 | HRGMv2_3678_10_7 | 5720 | 7183 | + | GT83 |
| pfam | HRGMv2_3678_10 | HRGMv2_3678_10_8 | 7425 | 7856 | + | HSP20 |
| TC | HRGMv2_3678_10 | HRGMv2_3678_10_9 | 8038 | 9204 | - | 2.A.39.1.3 |
| pfam | HRGMv2_3678_10 | HRGMv2_3678_10_10 | 9224 | 9601 | - | DUF488 | DUF488-N3a | DUF488-N3i |
| STP | HRGMv2_3678_10 | HRGMv2_3678_10_11 | 9693 | 10532 | - | PfkB |
| TC | HRGMv2_3678_10 | HRGMv2_3678_10_12 | 10624 | 12561 | - | 3.A.1.121.4 |
Gene ID: HRGMv2_3678_10_7
Type: CAZyme
Location: 5720 - 7183 (+)
Type: CAZyme
Location: 5720 - 7183 (+)
Gene ID: HRGMv2_3678_10_8
Type: pfam
Location: 7425 - 7856 (+)
Type: pfam
Location: 7425 - 7856 (+)
Gene ID: HRGMv2_3678_10_9
Type: TC
Location: 8038 - 9204 (-)
Type: TC
Location: 8038 - 9204 (-)
Gene ID: HRGMv2_3678_10_10
Type: pfam
Location: 9224 - 9601 (-)
Type: pfam
Location: 9224 - 9601 (-)
Gene ID: HRGMv2_3678_10_11
Type: STP
Location: 9693 - 10532 (-)
Type: STP
Location: 9693 - 10532 (-)
Gene ID: HRGMv2_3678_10_12
Type: TC
Location: 10624 - 12561 (-)
Type: TC
Location: 10624 - 12561 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Species
Caecibacter sp003467125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.