Cluster: HRGMv2_3678_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3678
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3678_6 | HRGMv2_3678_6_50 | 34797 | 35573 | - | 2.A.102.3.1 |
| pfam | HRGMv2_3678_6 | HRGMv2_3678_6_51 | 35587 | 36897 | - | Polysacc_deac_2 |
| CAZyme | HRGMv2_3678_6 | HRGMv2_3678_6_52 | 36989 | 38143 | - | GT28 |
| pfam | HRGMv2_3678_6 | HRGMv2_3678_6_53 | 38256 | 38534 | - | Bac_DNA_binding |
| pfam | HRGMv2_3678_6 | HRGMv2_3678_6_54 | 38531 | 40096 | - | TP_methylase | PRA-PH | PRA-PH | MazG | MazG |
| TC | HRGMv2_3678_6 | HRGMv2_3678_6_55 | 40119 | 41702 | - | 2.A.66.2.14 |
Gene ID: HRGMv2_3678_6_50
Type: TC
Location: 34797 - 35573 (-)
Type: TC
Location: 34797 - 35573 (-)
Gene ID: HRGMv2_3678_6_51
Type: pfam
Location: 35587 - 36897 (-)
Type: pfam
Location: 35587 - 36897 (-)
Gene ID: HRGMv2_3678_6_52
Type: CAZyme
Location: 36989 - 38143 (-)
Type: CAZyme
Location: 36989 - 38143 (-)
Gene ID: HRGMv2_3678_6_53
Type: pfam
Location: 38256 - 38534 (-)
Type: pfam
Location: 38256 - 38534 (-)
Gene ID: HRGMv2_3678_6_54
Type: pfam
Location: 38531 - 40096 (-)
Type: pfam
Location: 38531 - 40096 (-)
Gene ID: HRGMv2_3678_6_55
Type: TC
Location: 40119 - 41702 (-)
Type: TC
Location: 40119 - 41702 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Species
Caecibacter sp003467125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.