Cluster: HRGMv2_3651_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3651
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3651_1 | HRGMv2_3651_1_277 | 296963 | 298108 | - | GT28 |
| NULL(UNKNOWN) | HRGMv2_3651_1 | HRGMv2_3651_1_278 | 298108 | 299856 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3651_1 | HRGMv2_3651_1_279 | 299987 | 300880 | + | UDG |
| TC | HRGMv2_3651_1 | HRGMv2_3651_1_280 | 300877 | 302880 | + | 3.A.11.3.1 |
Gene ID: HRGMv2_3651_1_277
Type: CAZyme
Location: 296963 - 298108 (-)
Type: CAZyme
Location: 296963 - 298108 (-)
Gene ID: HRGMv2_3651_1_278
Type:
Location: 298108 - 299856 (-)
Type:
Location: 298108 - 299856 (-)
Gene ID: HRGMv2_3651_1_279
Type: pfam
Location: 299987 - 300880 (+)
Type: pfam
Location: 299987 - 300880 (+)
Gene ID: HRGMv2_3651_1_280
Type: TC
Location: 300877 - 302880 (+)
Type: TC
Location: 300877 - 302880 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.