Cluster: HRGMv2_3651_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3651
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3651_1 | HRGMv2_3651_1_222 | 237508 | 238572 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3651_1 | HRGMv2_3651_1_223 | 238591 | 240549 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3651_1 | HRGMv2_3651_1_224 | 240559 | 242475 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3651_1 | HRGMv2_3651_1_225 | 242533 | 243600 | + | GT4 |
| CAZyme | HRGMv2_3651_1 | HRGMv2_3651_1_226 | 243597 | 244709 | + | GT4 |
| TC | HRGMv2_3651_1 | HRGMv2_3651_1_227 | 244795 | 246189 | + | 9.B.18.1.2 |
Gene ID: HRGMv2_3651_1_222
Type: CAZyme
Location: 237508 - 238572 (+)
Type: CAZyme
Location: 237508 - 238572 (+)
Gene ID: HRGMv2_3651_1_223
Type:
Location: 238591 - 240549 (-)
Type:
Location: 238591 - 240549 (-)
Gene ID: HRGMv2_3651_1_224
Type:
Location: 240559 - 242475 (-)
Type:
Location: 240559 - 242475 (-)
Gene ID: HRGMv2_3651_1_225
Type: CAZyme
Location: 242533 - 243600 (+)
Type: CAZyme
Location: 242533 - 243600 (+)
Gene ID: HRGMv2_3651_1_226
Type: CAZyme
Location: 243597 - 244709 (+)
Type: CAZyme
Location: 243597 - 244709 (+)
Gene ID: HRGMv2_3651_1_227
Type: TC
Location: 244795 - 246189 (+)
Type: TC
Location: 244795 - 246189 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.