Cluster: HRGMv2_3651_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3651
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3651_10 | HRGMv2_3651_10_9 | 8613 | 9794 | - | 3.A.1.1.6 |
| pfam | HRGMv2_3651_10 | HRGMv2_3651_10_10 | 9976 | 11487 | + | N6_Mtase | MTS | Eco57I |
| pfam | HRGMv2_3651_10 | HRGMv2_3651_10_11 | 11459 | 12418 | + | BsuBI_PstI_RE | BsuBI_PstI_RE_N |
| TC | HRGMv2_3651_10 | HRGMv2_3651_10_12 | 12589 | 13716 | + | 9.A.23.1.1 |
| TC | HRGMv2_3651_10 | HRGMv2_3651_10_13 | 13987 | 15600 | + | 3.A.1.131.2 |
| CAZyme | HRGMv2_3651_10 | HRGMv2_3651_10_14 | 15616 | 16656 | + | GH18 |
Gene ID: HRGMv2_3651_10_9
Type: TC
Location: 8613 - 9794 (-)
Type: TC
Location: 8613 - 9794 (-)
Gene ID: HRGMv2_3651_10_10
Type: pfam
Location: 9976 - 11487 (+)
Type: pfam
Location: 9976 - 11487 (+)
Gene ID: HRGMv2_3651_10_11
Type: pfam
Location: 11459 - 12418 (+)
Type: pfam
Location: 11459 - 12418 (+)
Gene ID: HRGMv2_3651_10_12
Type: TC
Location: 12589 - 13716 (+)
Type: TC
Location: 12589 - 13716 (+)
Gene ID: HRGMv2_3651_10_13
Type: TC
Location: 13987 - 15600 (+)
Type: TC
Location: 13987 - 15600 (+)
Gene ID: HRGMv2_3651_10_14
Type: CAZyme
Location: 15616 - 16656 (+)
Type: CAZyme
Location: 15616 - 16656 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.