Cluster: HRGMv2_3649_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3649
- CGC Family ID: CGCFAM_00424
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3649_10 | HRGMv2_3649_10_45 | 45752 | 46681 | + | GT2 |
| pfam | HRGMv2_3649_10 | HRGMv2_3649_10_46 | 46686 | 47108 | + | FdtA |
| NULL(UNKNOWN) | HRGMv2_3649_10 | HRGMv2_3649_10_47 | 47101 | 47463 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3649_10 | HRGMv2_3649_10_48 | 47468 | 47812 | + | 2.A.7.33.5 |
| CAZyme | HRGMv2_3649_10 | HRGMv2_3649_10_49 | 47865 | 48866 | + | GT8 |
Gene ID: HRGMv2_3649_10_45
Type: CAZyme
Location: 45752 - 46681 (+)
Type: CAZyme
Location: 45752 - 46681 (+)
Gene ID: HRGMv2_3649_10_46
Type: pfam
Location: 46686 - 47108 (+)
Type: pfam
Location: 46686 - 47108 (+)
Gene ID: HRGMv2_3649_10_47
Type:
Location: 47101 - 47463 (+)
Type:
Location: 47101 - 47463 (+)
Gene ID: HRGMv2_3649_10_48
Type: TC
Location: 47468 - 47812 (+)
Type: TC
Location: 47468 - 47812 (+)
Gene ID: HRGMv2_3649_10_49
Type: CAZyme
Location: 47865 - 48866 (+)
Type: CAZyme
Location: 47865 - 48866 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.