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Cluster: HRGMv2_3649_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3649_10 HRGMv2_3649_10_31 33743 34690 + GT8
CAZyme HRGMv2_3649_10 HRGMv2_3649_10_32 34693 35673 + GT8
CAZyme HRGMv2_3649_10 HRGMv2_3649_10_33 35682 36113 + GT2
NULL(UNKNOWN) HRGMv2_3649_10 HRGMv2_3649_10_34 36212 36628 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3649_10 HRGMv2_3649_10_35 36728 37153 + DUF6078
TC HRGMv2_3649_10 HRGMv2_3649_10_36 37298 38743 + 2.A.66.5.2
pfam HRGMv2_3649_10 HRGMv2_3649_10_37 38792 39052 + DUF4160
pfam HRGMv2_3649_10 HRGMv2_3649_10_38 39108 39413 + DUF2442
CAZyme HRGMv2_3649_10 HRGMv2_3649_10_39 39427 40476 + GT32
CAZyme HRGMv2_3649_10 HRGMv2_3649_10_40 40473 41630 + GT4
Gene ID: HRGMv2_3649_10_31
Type: CAZyme
Location: 33743 - 34690 (+)
Gene ID: HRGMv2_3649_10_32
Type: CAZyme
Location: 34693 - 35673 (+)
Gene ID: HRGMv2_3649_10_33
Type: CAZyme
Location: 35682 - 36113 (+)
Gene ID: HRGMv2_3649_10_34
Type:
Location: 36212 - 36628 (+)
Gene ID: HRGMv2_3649_10_35
Type: pfam
Location: 36728 - 37153 (+)
Gene ID: HRGMv2_3649_10_36
Type: TC
Location: 37298 - 38743 (+)
Gene ID: HRGMv2_3649_10_37
Type: pfam
Location: 38792 - 39052 (+)
Gene ID: HRGMv2_3649_10_38
Type: pfam
Location: 39108 - 39413 (+)
Gene ID: HRGMv2_3649_10_39
Type: CAZyme
Location: 39427 - 40476 (+)
Gene ID: HRGMv2_3649_10_40
Type: CAZyme
Location: 40473 - 41630 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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