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Cluster: HRGMv2_3649_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3649_6 HRGMv2_3649_6_27 26387 28120 - 3.D.10.1.4
pfam HRGMv2_3649_6 HRGMv2_3649_6_28 28189 28989 - LRR_5 | LRR_5 | LRR_8
pfam HRGMv2_3649_6 HRGMv2_3649_6_29 29042 30028 + PseudoU_synth_2
TC HRGMv2_3649_6 HRGMv2_3649_6_30 30134 31153 + 3.A.1.24.2
TC HRGMv2_3649_6 HRGMv2_3649_6_31 31150 31803 + 3.A.1.24.5
pfam HRGMv2_3649_6 HRGMv2_3649_6_32 31800 33044 - DUF763
pfam HRGMv2_3649_6 HRGMv2_3649_6_33 33046 33810 - Methyltrans_RNA
TC HRGMv2_3649_6 HRGMv2_3649_6_34 33812 35041 - 2.A.23.3.4
TC HRGMv2_3649_6 HRGMv2_3649_6_35 35100 35903 - 3.A.1.34.1
TC HRGMv2_3649_6 HRGMv2_3649_6_36 35900 36817 - 3.A.1.34.1
pfam HRGMv2_3649_6 HRGMv2_3649_6_37 36826 37800 - ABC_sub_bind
TC HRGMv2_3649_6 HRGMv2_3649_6_38 38174 39691 - 2.A.21.2.3
TC HRGMv2_3649_6 HRGMv2_3649_6_39 40036 41367 + 3.A.1.1.45
TC HRGMv2_3649_6 HRGMv2_3649_6_40 41508 42356 + 3.A.1.1.45
TC HRGMv2_3649_6 HRGMv2_3649_6_41 42353 43198 + 3.A.1.1.45
TF HRGMv2_3649_6 HRGMv2_3649_6_42 43296 44333 + LacI
CAZyme HRGMv2_3649_6 HRGMv2_3649_6_43 44357 45841 + GH77
CAZyme HRGMv2_3649_6 HRGMv2_3649_6_44 46046 48205 + CBM4 | GH9
Gene ID: HRGMv2_3649_6_27
Type: TC
Location: 26387 - 28120 (-)
Gene ID: HRGMv2_3649_6_28
Type: pfam
Location: 28189 - 28989 (-)
Gene ID: HRGMv2_3649_6_29
Type: pfam
Location: 29042 - 30028 (+)
Gene ID: HRGMv2_3649_6_30
Type: TC
Location: 30134 - 31153 (+)
Gene ID: HRGMv2_3649_6_31
Type: TC
Location: 31150 - 31803 (+)
Gene ID: HRGMv2_3649_6_32
Type: pfam
Location: 31800 - 33044 (-)
Gene ID: HRGMv2_3649_6_33
Type: pfam
Location: 33046 - 33810 (-)
Gene ID: HRGMv2_3649_6_34
Type: TC
Location: 33812 - 35041 (-)
Gene ID: HRGMv2_3649_6_35
Type: TC
Location: 35100 - 35903 (-)
Gene ID: HRGMv2_3649_6_36
Type: TC
Location: 35900 - 36817 (-)
Gene ID: HRGMv2_3649_6_37
Type: pfam
Location: 36826 - 37800 (-)
Gene ID: HRGMv2_3649_6_38
Type: TC
Location: 38174 - 39691 (-)
Gene ID: HRGMv2_3649_6_39
Type: TC
Location: 40036 - 41367 (+)
Gene ID: HRGMv2_3649_6_40
Type: TC
Location: 41508 - 42356 (+)
Gene ID: HRGMv2_3649_6_41
Type: TC
Location: 42353 - 43198 (+)
Gene ID: HRGMv2_3649_6_42
Type: TF
Location: 43296 - 44333 (+)
Gene ID: HRGMv2_3649_6_43
Type: CAZyme
Location: 44357 - 45841 (+)
Gene ID: HRGMv2_3649_6_44
Type: CAZyme
Location: 46046 - 48205 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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