Cluster: HRGMv2_3649_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3649
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3649_6 | HRGMv2_3649_6_9 | 7328 | 8107 | - | 3.A.1.24.5 |
| NULL(UNKNOWN) | HRGMv2_3649_6 | HRGMv2_3649_6_10 | 8302 | 10008 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3649_6 | HRGMv2_3649_6_11 | 10164 | 11120 | - | GH18 |
| TC | HRGMv2_3649_6 | HRGMv2_3649_6_12 | 11139 | 13955 | - | 3.A.12.1.1 |
Gene ID: HRGMv2_3649_6_9
Type: TC
Location: 7328 - 8107 (-)
Type: TC
Location: 7328 - 8107 (-)
Gene ID: HRGMv2_3649_6_10
Type:
Location: 8302 - 10008 (+)
Type:
Location: 8302 - 10008 (+)
Gene ID: HRGMv2_3649_6_11
Type: CAZyme
Location: 10164 - 11120 (-)
Type: CAZyme
Location: 10164 - 11120 (-)
Gene ID: HRGMv2_3649_6_12
Type: TC
Location: 11139 - 13955 (-)
Type: TC
Location: 11139 - 13955 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.