Cluster: HRGMv2_3649_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3649
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3649_5 | HRGMv2_3649_5_42 | 44679 | 45518 | + | 9.A.25.1.1 |
| TC | HRGMv2_3649_5 | HRGMv2_3649_5_43 | 45991 | 47445 | + | 9.B.174.1.1 |
| pfam | HRGMv2_3649_5 | HRGMv2_3649_5_44 | 47442 | 48251 | + | Methyltrans_RNA |
| CAZyme | HRGMv2_3649_5 | HRGMv2_3649_5_45 | 48253 | 48993 | + | GT26 |
| TC | HRGMv2_3649_5 | HRGMv2_3649_5_46 | 49000 | 50061 | + | 3.A.23.1.1 |
Gene ID: HRGMv2_3649_5_42
Type: TC
Location: 44679 - 45518 (+)
Type: TC
Location: 44679 - 45518 (+)
Gene ID: HRGMv2_3649_5_43
Type: TC
Location: 45991 - 47445 (+)
Type: TC
Location: 45991 - 47445 (+)
Gene ID: HRGMv2_3649_5_44
Type: pfam
Location: 47442 - 48251 (+)
Type: pfam
Location: 47442 - 48251 (+)
Gene ID: HRGMv2_3649_5_45
Type: CAZyme
Location: 48253 - 48993 (+)
Type: CAZyme
Location: 48253 - 48993 (+)
Gene ID: HRGMv2_3649_5_46
Type: TC
Location: 49000 - 50061 (+)
Type: TC
Location: 49000 - 50061 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.