Cluster: HRGMv2_3649_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3649
- CGC Family ID: CGCFAM_00968
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3649_50 | HRGMv2_3649_50_6 | 2878 | 4131 | + | 2.A.66.2.10 |
| pfam | HRGMv2_3649_50 | HRGMv2_3649_50_7 | 4124 | 5377 | + | Glyphos_transf |
| CAZyme | HRGMv2_3649_50 | HRGMv2_3649_50_8 | 5374 | 6336 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3649_50 | HRGMv2_3649_50_9 | 6333 | 7586 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3649_50 | HRGMv2_3649_50_10 | 7583 | 8320 | + | GT2 |
| pfam | HRGMv2_3649_50 | HRGMv2_3649_50_11 | 8328 | 9134 | + | LicD |
| CAZyme | HRGMv2_3649_50 | HRGMv2_3649_50_12 | 9131 | 10309 | + | GT4 |
Gene ID: HRGMv2_3649_50_6
Type: TC
Location: 2878 - 4131 (+)
Type: TC
Location: 2878 - 4131 (+)
Gene ID: HRGMv2_3649_50_7
Type: pfam
Location: 4124 - 5377 (+)
Type: pfam
Location: 4124 - 5377 (+)
Gene ID: HRGMv2_3649_50_8
Type: CAZyme
Location: 5374 - 6336 (+)
Type: CAZyme
Location: 5374 - 6336 (+)
Gene ID: HRGMv2_3649_50_9
Type:
Location: 6333 - 7586 (+)
Type:
Location: 6333 - 7586 (+)
Gene ID: HRGMv2_3649_50_10
Type: CAZyme
Location: 7583 - 8320 (+)
Type: CAZyme
Location: 7583 - 8320 (+)
Gene ID: HRGMv2_3649_50_11
Type: pfam
Location: 8328 - 9134 (+)
Type: pfam
Location: 8328 - 9134 (+)
Gene ID: HRGMv2_3649_50_12
Type: CAZyme
Location: 9131 - 10309 (+)
Type: CAZyme
Location: 9131 - 10309 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.