Cluster: HRGMv2_3649_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3649
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3649_40 | HRGMv2_3649_40_8 | 7765 | 8754 | - | GH130_2 |
| CAZyme | HRGMv2_3649_40 | HRGMv2_3649_40_9 | 8773 | 9948 | - | GH130_1 |
| pfam | HRGMv2_3649_40 | HRGMv2_3649_40_10 | 9945 | 11126 | - | GlcNAc_2-epim |
| CAZyme | HRGMv2_3649_40 | HRGMv2_3649_40_11 | 11143 | 13272 | - | CBM27 | GH5_7 |
| TC | HRGMv2_3649_40 | HRGMv2_3649_40_12 | 13284 | 14441 | - | 3.A.1.1.18 |
| TC | HRGMv2_3649_40 | HRGMv2_3649_40_13 | 14466 | 15347 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_3649_40_8
Type: CAZyme
Location: 7765 - 8754 (-)
Type: CAZyme
Location: 7765 - 8754 (-)
Gene ID: HRGMv2_3649_40_9
Type: CAZyme
Location: 8773 - 9948 (-)
Type: CAZyme
Location: 8773 - 9948 (-)
Gene ID: HRGMv2_3649_40_10
Type: pfam
Location: 9945 - 11126 (-)
Type: pfam
Location: 9945 - 11126 (-)
Gene ID: HRGMv2_3649_40_11
Type: CAZyme
Location: 11143 - 13272 (-)
Type: CAZyme
Location: 11143 - 13272 (-)
Gene ID: HRGMv2_3649_40_12
Type: TC
Location: 13284 - 14441 (-)
Type: TC
Location: 13284 - 14441 (-)
Gene ID: HRGMv2_3649_40_13
Type: TC
Location: 14466 - 15347 (-)
Type: TC
Location: 14466 - 15347 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.